W-test: dataset adaptive association test for main and interaction effects in GWAS data

  JC School of Public Health and Primary Care (JC SPHPC)  |  Faculty of Medicine |  The Chinese University of Hong Kong (CUHK)  |  Hong Kong SAR

 

 

 

Method

 

Download

 

Guide
      - R

      - C++

      - Linux

 

CCRB-Statgene

 

 

  Guide for linux wtest program

 

  

   The linux software can be downloaded here:  run.sh,  linux.zip

 

   Please place the two files in a destination folder, and the genetic files in the same folder.

 

    Input file format:

 

   genotype.txt (in rows: subjects, in columns: coded SNPs; N x P matrix); 

   phenotype.txt , (N x 2 matrix, the 1st column is sample ID, and the 2nd column is phenotype).

 

     On a linux machine, open the terminal, type:

 

    chmod a+x run.sh

   

  ./run.sh

 

     Then the program will evoke, with the following steps the same as described in the C++ guide.

 

C-tutorial1.png

 

 

 

---- End of the linux tutorial -----

 

 

  If you find any problems of the program, please drop a message to: maggiew@cuhk.edu.hk

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

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